PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS60924.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 539aa    MW: 59630.9 Da    PI: 6.959
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS60924.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.79e-13362407454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  EPS60924.1 362 NHVEAERQRREKLNQKFYALRAVVPNV-----SKMDKASLLGDAISYINEL 407
                 799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-477190IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF1014479.68E-6196206No hitNo description
PROSITE profilePS5088817.25358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-18359429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-15361412No hitNo description
Gene3DG3DSA:4.10.280.108.7E-19362429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10362407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-17364413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MLSQENLQKR LISLIDGARE SWTYAIFWQN SAADGGCNFF PGVLSWGDGY YRGEDGGDNR  60
RRKTTSSPAE QEQRKEVLRE LSSLVSGGYP SSSAGDAVNE DVTDAEWFFL ISMTQTFHGG  120
IGIPGQASGT VWITGPERLA EAGCDRARQA LSHGIRTMAY IPVFNGVVEF GSTAVIFQNL  180
DLVKKVKSLF NFDASPPPPP PPPPPPVPGT TGFEFLSRRD LNFSDFRFNS SNNSSTMTMM  240
RNIGNSPCKH QSGEILNFGD NTAQMDNYFS SVVQADSDAI RAKKRYPTSK GSSNEGGGLS  300
FTSVVIAPSS SATLKADKVE SDHSDMEASV VKEAESSRAA LPERRPRKRG RKPANGREEP  360
LNHVEAERQR REKLNQKFYA LRAVVPNVSK MDKASLLGDA ISYINELRTQ LQNSEMDMQD  420
LKSQIESLNN HHHLPLPHES KRPRKCEEGE SFTATGEDAV DIEVKIIGRD DAMIRIQCSK  480
KNHPAAKLMT AFRELDLDLH HASLSVANEF MIQQATVKMG SRYFSQDQLR LALMSKIAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A1e-4821934195Transcription factor MYC3
4rs9_A1e-4821934195Transcription factor MYC3
4rqw_B1e-4821934195Transcription factor MYC3
4rqw_A1e-4821934195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343351RRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016500373.10.0PREDICTED: transcription factor MYC2-like
TrEMBLS8C2N10.0S8C2N1_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc08g076930.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33002449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.14e-80bHLH family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]